CGKB News and events Learning resources
Rice references
Publications on Rice
Agreement between (Depositor) and the Royal Norwegian Ministry of Agriculture and Food Concerning the Deposit of Seeds in the Svalbard Global Seed Vault. Available [online] from: http://www.nordgen.org/sgsv/scope/sgsv/files/SGSV_Deposit_Agreement.pdf. Date accessed: 4 February 2010.
Agreement sample form. Available from: http://sgrp.cgiar.org/sites/default/files/AgreementwithCentresfinal1.doc. Date accessed: 15 June 2010.
Annex I List of crops covered under the multilateral system [online]. Available from: http://www.croptrust.org/documents/web/Annex1.pdf. Date accessed: 4 February 2010.
Bioversity International, IRRI and WARDA. 2007. Descriptors for wild and cultivated rice (Oryza spp.). Bioversity International, Rome, Italy; International Rice Research Institute, Los Banos, Philippines; WARDA, Africa Rice Center, Contonou, Benin. Available here. (1.2 MB).
Bioversity International, IRRI. 2009. Key access and utilization descriptors for rice genetic resources. Bioversity International, Rome, Italy; International Rice Research Institute, Philippines. Available here.
Borromeo TH, Sanchez PL, Vaughan DA. 1994. Wild rices of the Philippines. Philippine Rice Research Institute, Maligaya, Nueva Ecija, Philippines.
Chakravarthi BK, Naravaneni R, 2006. SSR marker based DNA fingerprinting and diversity study in rice (Oryza sativa L.) [online]. Available from: http://ajol.info/index.php/ajb/article/viewFile/42772/26341. Date accessed: 2 June 2009
Chang TT, Vaughan DA.1989. Conservation and potentials of rice genetic resources. In: Bajaj YFS, editor. Biotechnology in agriculture and forestry. Berlin: Springer Verlag.
FAO/IPGRI. 1994. Genebank standards. Food and Agriculture Organization of the United Nations, Rome and International Plant Genetic Resources Institute, Rome. Available in English, Spanish, French and Arabic.
Fulton TM, Chunwongsw J, Taksley SD. 1995. Microprep protocol for extraction of DNA from tomato and other herbaceous plants. Plant Molecular Biology Reporter. 13(3):207-209. Available for purchase from: http://www.springerlink.com/content/x26j8q2r7644r668/.
Golden rice project [homepage] [online]. 2009. Available from: http://www.goldenrice.org/index.html. Date accessed: 30 June 2009.
Hanson J. 1985. Practical Manuals for Genebanks: Procedures for handling seeds in genebanks. IBPGR, Rome, Italy. HTML version available from: http://www2.bioversityinternational.org/publications/Web_version/188/. Date accessed: 10 June 2010.
International Rice GeneBank Operations Manual [online]. Available from: http://www.knowledgebank.irri.org/GRCManuals/default.htm. Date accessed: 1 February 2010.
International Rice GeneBank Operations Manual. [online] Available from: http://www.knowledgebank.irri.org/GRCManuals/default.htm. Date accessed: 10 Jun 2010.
Rice Knowledge Bank. Homepage [online]. Available from: www.knowledgebank.irri.org/rice.htm. Date accessed: 10 June 10.
IRRI. 2000. Manual of operations and procedures of the International Rice Genebank. Genetic Resources Center, IRRI.
ISTA. 2008. Detection of Pyricularia oryzae on Oryza sativa (Rice). International Seed Testing Association (ISTA), Bassersdorf, Switzerland. Available from: http://www.seedtest.org/upload/cms/user/7-011.pdf. Date accessed: 15 June 2010.
Korzun V. Molecular markers and their application in cereals breeding [online]. Available from: http://www.fao.org/biotech/docs/Korzun.pdf. Date accessed: 2 June 2009.
Lemaux GP. LL601 Rice. What Is It & What Does It Mean? Available from: http://ucbiotech.org/resources/factsheets/LibertyLink.pdf. Date accessed: 15 June 2010.
IRRI. 1997. Bt rice: Research and policy issues. IRRI Information Series No. 5. International Rice Research Institute, Philippines. ISSN 0117-3715. Available from: http://www.irri.org/publications/pdfs/bt.pdf. Date accessed: 15 June 2010.
ISIS. The 'Golden Rice' - An Exercise in How Not to Do Science. [online] Institute of Science in Society. Available from: http://www.i-sis.org.uk/rice.php. Date accessed: 30 June 2009.
Wang Y, Jonhston S. 2007. The status of GM rice R&D in China. Nature Biotechnology. 25:717-718. Abstract available from:
http://www.nature.com/nbt/journal/v25/n7/full/nbt0707-717.html. Date accessed: 15 June 2010.
Lu BR. 1999. Taxonomy of the genus Oryza (Poaceae): Historical perspective and current status. IRRN 24.3. IRRI, Los Baños, Laguna.
Manual of operations and procedures of the International Rice Genebank. 2000. Genetic Resources Center, IRRI. Available here.
Mew TW, Misra JK, editors. 1994. A Manual of Rice Seed Health Testing. International Rice Research Institute, Los Banos, Languna, Philippines. Available from: http://books.irri.org/9712200493_content.pdf. Date accessed: 15 June 2010.
Micro satellite markers [online]. Available from: http://www.gramene.org/markers/microsat/. Date accessed 2 June 2009.
Naredo MEB, Juliano AB, Lu BR, de Guzman FC, Jackson MT. 1998. Responses to seed dormancy breaking treatments in rice species (Oryza L). Seed Science and Technology, 26:675-689.
Rao NK, Hanson J, Dulloo ME, Ghosh K, Nowel D, Larinde M. 2006. Manual of seed handling in genebanks. Handbooks for Genebanks No. 8. Bioversity International, Rome, Italy. Available in English (1.5 MB), Spanish (1.4 MB) and French (1.9 MB).
Rao NK, Jackson MT. 1996a. Seed longevity of rice cultivars and strategies for their conservation in genebanks. Annals of Botany 77:251-260.
Rao NK, Jackson MT. 1996b. Seed production environment and storage longevity of japonica rices (Oryza sativa L.). Seed Science Research 6:17-21.
Rao NK, Jackson MT. 1996c. Effect of sowing date and harvest time on longevity of rice seeds. Seed Science Research 7:13-20.
Reaño R, Pham JL. 1998. Does cross-pollination between accessions occur during seed regeneration at the International Rice Genebank. International Rice Research Notes 23(3):5-6.
Reed BM, Engelmann F, Dulloo ME, Engels JMM. 2004. Technical guidelines for the management of field and in vitro germplasm collections. Handbook for Genebanks No. 7. IPGRI, Rome, Italy. Available here.
Rice Knowledge Bank [online]. Available from: http://www.knowledgebank.irri.org/rice.htm. Date accessed: 1 February 2010.
Sackville-Hamilton NRS, Chorlton KH. 1997. Regeneration of accessions in seed collections: a decision guide. Handbook for Genebanks No. 5. IPGRI, Rome, Italy. Available here.
Sarao NK, Vikal Y, Singh K, Joshi MA, Sharma RC. 2009. SSR marker-based DNA fingerprinting and cultivar identification of rice (Oryza sativa L.) in Punjab state of India.
SNP fact sheets [online]. Available from: http://www.ornl.gov/sci/techresources/Human_Genome/faq/snps.shtml. Date accessed: 2 June 2009.
Standard Material Transfer Agreement (SMTA). [online] Available from: http://www.planttreaty.org/smta_en.htm. Date accessed: 3 June 2010.
Tateoka T. 1962a. Taxonomic studies of Oryza I. O. latifolia complex. Bot. Mag. Tokyo 75:418-427.
Tateoka T. 1962b. Taxonomic studies of Oryza II. Several species complexes. Bot. Mag. Tokyo. 75: 455-461
Tateoka T. 1963. Taxonomic studies of Oryza III. Key to the species and their enumeration. Bot. Mag. Tokyo. 76: 166-173.
The Consultative Group on International Agricultural Research [homepage of the CGIAR] [online] Available from: www.cgiar.org. Date accessed: 4 February 2010.
The International Treaty on Plant Genetic Resources for Food and Agriculture [homepage of the ITPGRFA] [online]. Available from: http://www.planttreaty.org/ Date accessed: 4 February 2010.
Van Soest LJM. 1990. Plant Genetic Resources: Safe for the future in genebanks. Impact of Science on Society 158:107-120.
Vaughan DA, Chang TT. 1992. In situ conservation of rice genetic resources. Economic Botany 46(4): 368-383.
Vaughan DA, Morishima H, Kadowaki K. 2003. Diversity in the Oryza genus. Current Opinion 6:139-146.
Vaughan DA, Sitch LA. 1991. Gene flow from the jungle to farmers. Bioscience Vol. 41(1):22-28.
Vaughan DA. 1989. The genus Oryza L. Current status of taxonomy. IRRI Research Paper Series 138, Manila, Philippines.
Vaughan DA. 1992. The wild relatives of rice: A genetic resources handbook. IRRI, Los Baños, Philippines.
Wheat references
Publications on Wheat
AOSA (Association of Official Seed Analysts). 2005. Page 113 in: Rules for Testing Seeds (Capashew Ed.), 4-0, 4-11. Las Cruces, New Mexico.
Bioversity International, CIMMYT. 2009. Key access and utilization descriptors for wheat genetic resources. Bioversity International, Rome, Italy; International Maize and Wheat Improvement Center, Mexico. Available here.
Breese EL. 1989. Regeneration and multiplication of germplasm resources in seed genebanks: The scientific background. HTML version available from: http://www2.bioversityinternational.org/publications/Web_version/209/. Date accessed: 9 June 2010.
CGN Quality Manual [online]. Available from: http://documents.plant.wur.nl/cgn/quality/content/QM11.htm. Date accessed: 4 February 2010.
CIMMYT. 2005. Laboratory Protocols: CIMMYT Applied Molecular Genetics Laboratory. Third Edition. Mexico, D.F., CIMMYT. ISBN 9686923306.
Cook RJ, Veseth RJ. 1991. Wheat Health Management. APS Press, The American Phytopathological Society, St. Paul, MN, USA.
Dubin HJ, Fisher RA, Mujeeb-Kazi A, Pena RJ, Sayre KD, Skovmand B, Valkoun J. 1997. Wheat. In: Fuccillo D, Sears L, Stapleton P, editors. Biodiversity in Trust. Cambridge University Press. pp. 309-320.
Ellis RH, Hong TD, Roberts EH. 1985. Handbook of seed technology for genebanks volume I. Principles and methodology. Handbooks for Genebanks no. 2. International Board for Plant Genetic Resources, Rome, Italy.
Ellis RH. 1998. Longevity of seeds stored hermetically at low moisture contents. Seed Science Research 8 supplement 1:9-10.
Engels JMM, Visser L, editors. 2003. A guide to effective management of germplasm collections. IPGRI Handbooks for Genebanks No. 6. IPGRI, Rome, Italy. Available in English (1.4 MB) and Spanish (1.5 MB).
FAO/IPGRI. 1994. Genebank standards. Food and Agriculture Organization of the United Nations, Rome and International Plant Genetic Resources Institute, Rome. Available in English, Spanish, French and Arabic.
FAO/IPGRI. 2001. Multi-Crop Passport Descriptors. FAO and IPGRI, Rome, Italy. Available in English, French and Spanish.
Gill BS, Friebe B. 2002. Cytogenetics, phylogeny and evolution of cultivated wheats. In: Curtis BC, Rajaram S, Gómez Macpherson H, editors. Bread Wheat: improvement and production. Food and Agriculture Organization of the United Nations, Rome, Italy. pp. 71-88. Available from: http://www.k-state.edu/wgrc/Publications/2002/8697.pdf.
Global Crop Diversity Trust. 2007. Global strategy for the ex situ conservation with enhanced access to wheat, rye and triticale genetic resources [online]. Available from: URL: http://www.croptrust.org/documents/web/Wheat-Strategy-FINAL-20Sep07.pdf. Date accessed: 6 July 2009.
Gomez-Campo C. 2006. Erosion of genetic resources within seed genebanks: the role of seed containers. Seed Science Research 16:291-294.
Hanson J. 1985. Procedures for handling seeds in genebanks. Practical manuals for genebanks no. 1. International Board for Plant Genetic Resources, Rome. HTML version available from: http://www2.bioversityinternational.org/publications/Web_version/188/.
Hong TD, Ellis RH. 1996. A protocol to determine seed storage behavior. IPGRI Technical Bulletin No. 1. International Plant Genetic Resources Institute. Rome. Italy. Available here.
Hong TD, Linington S, Ellis RH. 1996. Seed storage behaviour: a compendium. Handbooks for genebanks no 4. International Plant Genetic Resources Institute, Rome.
IBGRI. 1994. Descriptors for barley (Hordeum vulgare L.). International Board for Plant Genetic Resources Secretariat, Rome, Italy. Available here.
IBPGR, CEC. 1985. Descriptors for wheat (revised). International Board for Plant Genetic Resources Secretariat, Rome, Italy; Commission of European Communities Secretariat, Brussels. Available here.
IBPGR, Information Sciences/Genetic Resources, University of Colorado (USA). 1978. Descriptors for Wheat and Aegilops. International Board for Plant Genetic Resources, Rome, Italy. 29p. Available here.
IBPGR. 1985. Descriptors for Rye and Triticale. International Board for Plant Genetic Resources Secretariat, Rome, Italy. HTML version available from: http://www.bioversityinternational.org/index.php?id=19&user_bioversitypublications_pi1[showUid]=2265. Date accessed: 16 May 2010.
IBPGR. 1985. Oat descriptors. International Board for Plant Genetic Resources, Rome, Italy. HTML version available from: http://www.bioversityinternational.org/index.php?id=19&user_bioversitypublications_pi1[showUid]=2209. Date accessed: 16 May 2010.
International Seed Testing Association ISTA. 1993. International rules for seed testing. Seed Science and Technology 21, Supplement.
ISTA. 2008. International Rules for Seed Testing. ISTA Secretariat, Switzerland.
Justice OL, Bass LN. 1978. Principles and practices of seed storage. Agriculture handbook no. 506. U.S. Government Printing Office, Washington D.C.
Lehmann ChO, Mansfeld R. 1957. Zur Technik der Sortimentserhaltung [On the technique for collection-maintenance]. Kulturpflanze 5:108–138.
Mathre DE, editor. 1997. Compendium of Barley Diseases, 2nd edition. APS Press, The American Phytopathological Society, St. Paul, MN, USA.
Mezzalama ML, Gilchrist L, McNab A. 2001. Seed health: rules and regulations for the safe movement of germplasm. CIMMY T, Mexico City, Mexico.
Pardey PG, Koo B, Van Dusen ME, Skovmand B, Taba S, Wright BD. 2001. Costing the conservation of genetic resources: CIMMYT’s ex situ maize and wheat collection. Crop Science 41(4):1286-1299.
Probert RJ, Hay FR. 2000. Keeping seeds alive. In: Black M, Bewley JD, editors. Seed technology and its biological basis. CRC Press LLC. USA and Canada. pp. 375-404.
Taba S, van Ginkel M, Hoisington D, Poland D. 2004. Wellhausen-Anderson Plant Genetic Resources Center: Operations Manual, 2004. El Batan, Mexico: CIMMYT. Available here (0.5 MB)
Thormann I, Metz T, Engels JMM. 2004. The Species Compendium (release 1.0; December 2004). [online]. Available from: http://www.bioversityinternational.org/scientific_information/Information_Sources/Species_Databases /Species_Compendium.html. Date accessed: 31 March 2010.
Walters C, Wheeler LM, Grotenhuis JM. 2005. Longevity of seeds stored in a genebank: species characteristics. Seed Science Research 15:1-20.
Warham EJ, Butler LD, Sutton BC. 1996. Seed testing of maize and wheat: A laboratory guide. CIMMYT, Mexico and CAB International, UK.
Wiese MV. 1987. Compendium of Wheat Diseases, 2nd edition. APS Press, The American Phytopathological Society, St. Paul, MN, USA.
Other crops references
Publications on Other crops
Bean
Key access and utilization descriptors for bean genetic resources, Bioversity International and Centro Internacional de Agricultura Tropical (CIAT), 2009. Click here to open this publication (0.1 MB)
Potato
Jeffries CJ. 1998. Potato: FAO/IPGRI Technical guidelines for the safe movement of potato germplasm. International Plant Genetic Resources Institute. Rome, Italy. Click here to open this publication (1.9MB)
Procedures references
Publications on Procedures
A - B - C - D - E - F - G - H - I - J - K - L - M - N - O - P - Q - R - S - T - U - V - W - X - Y - Z |
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Adair R, Johnson RC, Hellier B, Kaiser W. 2006. Collecting tapertip onion (Allium acuminatum Hook.) in the great basin using traditional and GIS methods. Native Plant Journal 7(2):141–148.
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APG III. 2009. An update of the angiosperm phylogeny group classification for the orders and families of flowering plants: APG III. Botanical Journal of the Linnean Society 161(2):105–121. Available online (accessed 6 October 2011): http://onlinelibrary.wiley.com/doi/10.1111/j.1095-8339.2009.00996.x/pdf.
Arai-Kichise Y, Shiwa Y, Nagasaki H, Ebana K, Yoshikawa H, Yano M, Wakasa K. 2011. Discovery of genome-wide DNA polymorphisms in a landrace cultivar of japonica rice by whole-genome sequencing. Plant Cell Physiology 52(2):274–282.
Araújo MB, Pearson RG, Thuiller W, Erhard M. 2005. Validation of species-climate impact models under climate change. Global Change Biology 11:1504–1513.
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Atlas Florae Europaeae. 2011. Distribution of Vascular Plants in Europe. Finnish Museum of Natural History, University of Helsinki, Helsinki. Available online (accessed 6 October 2011): www.luomus.fi/english/botany/afe/index.htm.
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Bagyaraj JD, Stümer SL. 2008. Arbuscular mycorrhizal fungi. In: Moreira FMS, Huising J, Bignell DE, editors. A Handbook of Tropical Soil Biology. Earthscan, London. pp.131–146.
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Benson EE, Harding K, Debouck D, Dumet D, Escobar R, Mafla G, Panis B, Panta A, Tay D, Van den houwe I, Roux N. 2011. Refinement and standardization of storage procedures for clonal crops - Global Public Goods Phase 2: Part I. Project landscape and general status of clonal crop in vitro conservation technologies. System-wide Genetic Resources Programme, Rome, Italy. Available here (2.5 MB).
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Benson EE, Harding K, Debouck D, Dumet D, Escobar R, Mafla G, Panis B, Panta A, Tay D, Van den houwe I, Roux N. 2011. Refinement and standardization of storage procedures for clonal crops - Global Public Goods Phase 2: Part III. Multi-crop guidelines for developing in vitro conservation best practices for clonal crops. System-wide Genetic Resources Programme, Rome, Italy. Available here (4.5 MB).
Berjak P, Pammenter NW. 2003. Understanding and handling desiccation-sensitive seeds. In: Smith RD, Dickie JB, Linington SH, Pritchard HW, Probert RJ, editors. Seed Conservation: Turning Science into Practice. The Royal Botanic Gardens, Kew, Richmond, UK. pp. 415–430. Available online (accessed 4 October 2011): www.kew.org/msbp/scitech/publications/SCTSIP_digital_book/pdfs/Chapter_22.pdf.
Berjak P, Pammenter NW. 2008. From Avicennia to Zizania: seed recalcitrance in perspective. Annals of Botany 101:213–228.
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Bhullar NK, Street K, Mackay M, Yahiaoui N, Keller B. 2009. Unlocking wheat genetic resources for the molecular identification of previously undescribed functional alleles at the Pm3 resistance locus. Proceedings of the National Academy of Sciences 106:9519 –9524.
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Bioversity and The Christensen Fund. 2009. Descriptors for Farmers’ Knowledge of Plants. Bioversity International, Rome, and The Christensen Fund, Palo Alto, California. Available online (accessed 8 October 2011): www.bioversityinternational.org/nc/publications/publication/issue/descriptors_for_farmers_knowledge_of_plants.html.
Bioversity International. 2009. Modern crop varieties can increase local genetic diversity. Plant Breeding News, an Electronic Newsletter of Applied Plant Breeding, edition 201, May 2009. Available online (accessed 6 October 2011): www.fao.org/ag/agp/agpc/doc/services/pbn/pbn-201.htm#a115.
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Blach-Overgaard A, Svenning J-C, Dransfield J, Greve M, Balslev H. 2010. Determinants of palm species distributions across Africa: the relative roles of climate, non-climate environmental factors, and spatial constraints. Ecography 33:380–391.
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Bolat I, Pirlak L. 1999. An investigation on pollen viability, germination and tube growth in some stone fruits. Turkish Journal of Agriculture and Forestry 23:383–388.
Bontemps C, Elliott G, Simon MF, Does Reis Junior FB, Gross E, Lauton RC, Elias Neto N, Loureiro MF, de Faria S, Sprent J, James EK, Young P. 2010. Burkholderia species are ancient symbionts of legumes. Molecular Ecology 19:44–52.
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