Crop Genebank Knowledge Base

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Publications

Management strategies references

Publications on Management strategies

Genetic identity

Booklet of CGIAR Centre Policy Instruments, Guidelines and Statements on Genetic Resources, Biotechnology and Intellectual Property Rights. Statements on Genetic Resources, Biotechnology and Intellectual Property Rights, Version II - Rome, July 2003, 51 pp. Click here to open this publication (0.7 MB)

Guiding principles for CGIAR Centres' policies to address the possibility of unintentional presence of transgenes in ex situ collections. Click here to open this publication

Hernandez-Suarez CM, Montesinos-Lopez O, Crossa J, McLaren G. 2008. Probability models for detecting transgenic plants.. Seed research Science 18: 77–89.

Hirano R, Jatoi SA, Kawase M, Kikuchi A, Watanabe N. 2009. Consequences of ex situ Conservation on the Genetic Integrity of Germplasm Held at Different Gene Banks: A Case Study of Bread Wheat Collected in Pakistan. Crop Sci 49:2160-2166.

Safe Transfer of Germplasm (STOG)

For specific references on pests and diseases please check the STOG pages.

Ahmed KM, Ravinder Reddy Ch.1993. A Pictorial guide to the identification of seed borne fungi of sorghum, pearl millet, finger millet, chickpea, pigeonpea and groundnut. Information Bulletin No. 34. Patancheru, A.P. 502 324 India: International Crops Research Institute for the semi-Arid Tropics. 200 pp.

Chakrabarty SK, Anitha K, Girish AG, Sarath Babu B, Prasada Rao RDVJ, Varaprasad KS, Khetarpal RK, Thakur RP. 2005. Germplasm exchange and quarantine of ICRISAT mandate crops. Information Bulletin No. 69. Rajendranagar 500 030, Andhra Pradesh, India: National Bureau of Plant Genetic Resources; and Patancheru 502 324, Andhra Pradesh, India: International Crops Research Institute for the Semi Arid Tropics. 80pp.

CABI, Crop Protection Compendium, 2007  CD-ROM Edition, www.cabicompendium.org/cpc

Compendium of barley diseases, 1997, Second Edition, Edited by D.E. Mathre. APS Press. St Paul, MN. USA. ISBN 0-89054-180-9.

Compendium of Corn Diseases. 1999. Third Edition. Editor, Donald White. APS Press, St. Paul, MN. USA. ISBN 0-89054-234-1.

Compendium of Wheat Diseases and Pests. 2010. Edited by William W. Bockus, Robert L. Bowden, Robert M. Hunger, Wendell L.
Morrill, Timothy D. Murray, and Richard W. Smiley. APS Press, St. Paul, MN. USA. ISBN 978-89054-385-6.

Mew TW, Misra JK. 1994. A manual of Rice Seed Health Testing. IRRI, Manila, The Philippines, 114,pp.

Mew TW, Gonzales P. 2002. A handbook of Rice Seedborne Fungi. Los Baños (Philippines): IRRI, and Enfield N.H.(USA) Science Publishers Inc. 83 pp.

Policies

The Cartagena Protocol on Biosafety

The Agreement on Trade Related Aspects of Intellectual Property Rights (TRIPS)

IUCN explanatory guide to the Treaty (http://data.iucn.org/dbtw-wpd/edocs/EPLP-057.pdf) (2 MB)

Risk management

Alconero R, Weeden NF, Gonsalves D, Fox DT. 1985. Loss of genetic diversity in pea germplasm by the elimination of individuals infected by pea seedborne mosaic virus. Annals of Applied Biology 106: 357-364.

Benson EE. 2008. Cryopreservation of phytodiversity: A critical appraisal of theory & practice. Critical Reviews in Plant Sciences, 27: 3, 141-219.

Calles T, Dulloo ME, Engels JMM, Van den Houwe I. 2009. Best Practices for Germplasm Management: A New Approach for Achieving Genebank Standards. Bioversity International, Rome, Italy. 52 pp.

CIAT Risk Management Team. 2004. Risk Management at the CIAT genebank operations.

CIP Risk Management Team. 2004.  Genetic Resources Risk Management in CIP.

Clark RL, Shands HL, Bretting PK, Eberhardt SA. 1997. Managing large diverse germplasm collections. Crop Science 37: 1-6.

Clement SL, Griswold TL, Rust RW, Hellier BC, Stout DM. 2006. Bee associates of flowering Astragalus and Onobrychis genebank accessions at a Snake River site in Eastern Washington. Journal of the Kansas Entomological Society 79 (3): 254-260

Ellis D, Gardner C. 2006. Maintaining Genetic Integrity in Germplasm Collections. Paper presented at the APEC Workshop on Effective Genebank Management, June 28, 2006, Suwon, Korea. (Can be obtained from Dave Ellis [ This email address is being protected from spambots. You need JavaScript enabled to view it." ' + path + '\'' + prefix + ':' + addy83772 + '\'>'+addy_text83772+'<\/a>'; //--> This e-mail address is being protected from spambots. You need JavaScript enabled to view it ])

Fitzsimon J. 2006. Enterprise Risk Management. Good Practice Note No. 10. CGIAR Internal Auditing Unit. (Can be obtained from John Fitzsimon [ This email address is being protected from spambots. You need JavaScript enabled to view it." ' + path + '\'' + prefix + ':' + addy50510 + '\'>'+addy_text50510+'<\/a>'; //--> This e-mail address is being protected from spambots. You need JavaScript enabled to view it ])

Fitzsimon J. 2007. Conservation and Use of Genetic Resources: Risk Management. Paper presented at the GPG2/GCP Quality Management and Performance Management System Design Workshop, October 2007, Lunteren, Netherlands. (Can be obtained from John Fitzsimon [ This email address is being protected from spambots. You need JavaScript enabled to view it." ' + path + '\'' + prefix + ':' + addy56242 + '\'>'+addy_text56242+'<\/a>'; //--> This e-mail address is being protected from spambots. You need JavaScript enabled to view it ])

GRC Risk Management Team. 2007. Risk Matrix at the IRRI Genetic Resources Center.

ICARDA Risk Management Team. 2005. Risk Analysis of Genetic Resources in ICARDA.

ICRISAT Risk Management Team. 2007. Risk Management at ICRISAT.

IITA Risk Management Committee. 2008. Risk Assessment Report at IITA. (0.1 MB)

INIBAP Risk Management Team. 2008. Risk Assessment Report at INIBAP Musa Genebank.

Panis B, Thinh NT. 2001. Cryopreservation of Musa germplasm. In: Escalant, Sharrock S, editors. JVINIBAP Technical Guideline 5. International Network for the Improvement of Banana and Plantain. Montpellier, France.

Rao NK, Hanson J, Dulloo ME, Ghosh K, Nowell D, Larinde M. 2006. Manual of genebanks. Handbooks for Genebanks No. 8. Bioversity International, Rome, Italy.

Reed BM, Engelmann F, Dulloo ME, Engels JMM. 2004. Technical guidelines for the management of field and in vitro germplasm collections. IPGRI Handbooks for Genebanks No. 7. International Plant Genetic Resources Institute, Rome, Italy.

USDA Forage and Turf Grass Crop Germplasm Committee. 1997. Crop vulnerability statement for forage and turf. (Can be obtained from Blair L. Waldron [ This email address is being protected from spambots. You need JavaScript enabled to view it." ' + path + '\'' + prefix + ':' + addy55490 + '\'>'+addy_text55490+'<\/a>'; //--> This e-mail address is being protected from spambots. You need JavaScript enabled to view it ])

USDA Maize Crop Germplasm Committee. 2000. Maize report and vulnerability statement. http://www.ars-grin.gov/npgs/cgc_reports/maize00.htm

USDA Potato Germplasm Committee. 2004. Genetic vulnerability in potato. (Can be obtained from John Bamberg [ This email address is being protected from spambots. You need JavaScript enabled to view it." ' + path + '\'' + prefix + ':' + addy57621 + '\'>'+addy_text57621+'<\/a>'; //--> This e-mail address is being protected from spambots. You need JavaScript enabled to view it ])

USDA Rice Germplasm Committee. 2004. Crop vulnerability statement for rice.
http://www.ars-grin.gov/npgs/cgc_reports/CropVulnerabilityRiceRevised.pdf

USDA Sorghum and Millet Crop Germplasm Committee. 2004. Sorghum and millet vulnerability statement. (Can be obtained from Gary C. Peterson [ This email address is being protected from spambots. You need JavaScript enabled to view it." ' + path + '\'' + prefix + ':' + addy66702 + '\'>'+addy_text66702+'<\/a>'; //--> This e-mail address is being protected from spambots. You need JavaScript enabled to view it ])

USDA Sweetpotato Crop Germplasm Committee. 2001. Sweetpotato germplasm acquisition, maintenance and evaluation priorities 2001-2006. (Can be obtained from G. Craig Yencho [ This email address is being protected from spambots. You need JavaScript enabled to view it." ' + path + '\'' + prefix + ':' + addy81816 + '\'>'+addy_text81816+'<\/a>'; //--> This e-mail address is being protected from spambots. You need JavaScript enabled to view it ])

USDA Vigna Crop Germplasm Committee. 2004. Vigna germplasm: Current status and future needs.
http://www.ars-grin.gov/npgs/cgc_reports/vignarpt2004.pdf

USDA Wheat Crop Germplasm Committee. 1996. Wheat vulnerability report.
http://www.ars-grin.gov/npgs/cgc_reports/1996_wheatcgc_report.pdf

Decision support tool

Altoveros NC, RV. Rao. 1998. Analysis of information on seed germplasm regeneration practices. In Regeneration of Seed Crops and their Wild Relatives: Proceedings of a Consultation Meeting, 4-7 December 1995, ICRISAT, Hyderabad, India, ed. J. M. M. Engels, and R. R. Rao. Rome: IPGRI.

Burstin J, Lefort M, Mitteau M, Sontot A, Guiard J. 1997. Towards the assessment of the costs of genebank management: conservation, regeneration, and characterization. Plant Varieties and Seeds 10: 163-172.

Calles T, Dulloo ME, Engelsn JMM, van den Houwe I. 2007. Best practices for germplasm management: A new approach for achieving genebank standards. Bioversity International.

Chakrabarty SK, Anitha K, Girish AG, Sarath Babu B, Rao PRDVJ; Varaprasad KS, Khetarpal RK, Thakur RP. 2005. Germplasm exchange and quaantine of ICRISAT mandate crops. Information Bulleting No. 69. Plant Quarentine Laboratory, ICRISAT, Patancheru.

Day-Rubenstein K, Heisey P, Shoemaker R, Sullivan J, Frisvold G. 2005. Crop genetic resources: An economic appraisal. A report from the economic research service. Economic Information Bulletin Number 2. United Stated Department of Agriculture.

De Boer L. 1992. Economies of scale and input substitution in public libraries. Journal of Urban Economics 32 (2): 257-268.

ECPGR. 2008. A strategic framework for the implementation of a European genebank integrated system (AEGIS). Discussion Paper.European Cooperative Programme for Plant Genetic Resources (ECPGR) .

Engels JMM, Rao RR. 1998. Regeneration of Seed Crops and their Wild Relatives. Rome: IPGRI.

Epperson J, Pachico DH, Guevara C. 1997. A costs analysis of maintaining cassava plant genetic resources. Crop Science 37: 1641 - 1649 (1991).

FAO. 2002. International Treaty on Plant Genetic Resources for Food and Agriculture: A global treaty for food security and sustainable agriculture. Food and Agriculture Organization of the United Nations: Rome.

Finch L, Christianson JB. 1981. Rural hospitals costs: an analysis with policy implications. Public Health Reports 96: 423-433.

Fowler C, Hodgkin T. 2004. Plant genetic resources for food and agriculture: Assessing global availability. Vol.2004. 29 ed.

Hardaker JB, Huirne RBM, Anderson JR. 1997. Coping with risk in agriculture. Wallingford: CAB International.

Johnson N, Pachico D, Voysest O. 2003. The distribution of benefits from public international banks: the case of beans in Latin America. Agricultural Economics 29 (2003) 277 - 286. 

Koo B, Pardey PG, Wright BD. 2003. The economic costs of conserving genetic resources at the CGIAR centres. Agricultural Economics 29: 287-297.

Koo Bonwoo, Pardey PG, Wright BD, Bramel P, Debouck D, van Dusen ME, Jackson MT, Rao NK, Skovmand B, Taba S, Valkoun J. 2004. Saving seeds: The economics of conserving crop genetic resources ex-situ in the future harvest centres of the CGIAR. Oxfordshire: CABI Publishing.

Koo B, Wright BD. 2008. The optimal timing of evaluation genebank accessions and the effects of biotechnology. American Journal of Agricultural Economics 82 (4): 797-811.

Li D, Prtichard H. 2009. The science and economics of ex-situ plant conservation. Special issue: Plant science research in botanic gardens.

Liu LG. 2002. The cost functions and scale economies in academic research libraries. Library Trends 2002: 406-420.

Mafla G, Roa JC, Aranzales E, Debouck DG. Handbook of procedures for in-vitro germplasm conservation of the genus Maniot. Genetic Resources - CIAT: Cali.

Pardey PG, Koo B, van Dusen ME, Skovmand B, Taba S. 2001. Costing the Conservation of Genetic Resources: CIMMYT's Ex Situ Maize and Wheat Collection. Crop Science 41: 1286-1299.

Rao NK, Hanson J, Dulloo ME, Ghosh K, Nowell D, Larinde M. 2006. Manual of seed handling in genebanks. Handbook for Genebanks No. 8, Maccarese, Italy: Bioversity International.

Salcedo J, Debouck DG, Torres AM, Guevara C. 2006. Flow Chart of Operations for Bean and Tropical Forage Germplasm. Genetic Resources - CIAT: Cali.

Smale M, Drucker AG. 2007. Agricultural Development and the Diversity of Crop and Livestock Genetic Resources: A Review of the Economics Literature. In Biodiversity Economics, ed. A. Kontoleon, U. Pascual, and T. Swanson. Cambridge: Cambridge University Press.

Smale M, Koo B. 2003. Genetic Resources Policies: What is a Gene Bank Worth? IFPRI: Washington, D.C.: IFPRI, IPGRI, and the Systemwide Genetic Resources Program.

Taba S, van Ginkel M, Hoisington D, Poland D. 2004. Wellhausen-Anderson Plant Genetic Resources Center: Operations Manual, 2004. El Batan, Mexico: CIMMYT Click here to open this manual. (0.5 MB)

Upadhayaya H, Gowda CLL, Sastry DVSSR. 2008. Plant genetic resources management: collection, characterization, conservation and utilization. SAT eJournal (ejournal.icrisat.org) An Open Source Journal published by ICRISAT: December 2006, Volume 6.

Virchow D. 2003. Current expenditures on crop genetic resources activities. In Efficient conservation of crop genetic diversity, ed. D. Virchow. Berlin: Springer-Verlag.

Virchow D. 1999. Spending on conservation of plant genetic resources for food and agriculture: How much and How efficient? ZEF Discussion Papers on Development Policy. Bonn: Center for Development Research.


Procedures references

Publications on Procedures

A - B - C - D - E - F - G - H - I - J - K - L - M - N - O - P - Q - R - S - T - U - V - W - X - Y - Z

AAB. 1985 et seq. Descriptions of Plant Viruses. Association of Applied Biologists, Wellesbourne, UK.

Abreu I, Oliveira M. 2004. Fruit production in kiwifruit (Actinidia deliciosa) using preserved pollen. Australian Journal of Agricultural Research 55:565–569.

Adair R, Johnson RC, Hellier B, Kaiser W. 2006. Collecting tapertip onion (Allium acuminatum Hook.) in the great basin using traditional and GIS methods. Native Plant Journal 7(2):141–148.

Afonin A, Greene SL. 1999. Germplasm collecting using modern geographic information technologies: directions explored by the N.I. Vavilov Institute of Plant Industry. In: Greene SL, Guarino L, editors. Linking Genetic Resources and Geography: Emerging Strategies for Conserving and Using Crop Biodiversity. CSSA Special Publication 27. American Society of Agronomy, Madison, Wisconsin. pp.75–85.

Aggarwal AK, Brar DS, Nandi S, Huang N, Khush GS. 1999. Phylogenetic relationships among Oryza species revealed by AFLP markers. Theoretical and Applied Genetics 98:1320–1328.

Agichtein E, Gabrilovich E, Zha H. 2009. The social future of web search: modeling, exploiting, and searching collaboratively generated content. IEEE Data Engineering Bulletin 32(4):1–10. Available on-line (accessed 20 September 2011): http://sites.computer.org/debull/A09June/agichtein_ssm1.pdf .

Akihama T, Omura M. 1986. Preservation of fruit tree pollen. In: Bajaj YPS, editor. Biotechnology in Agriculture and Forestry. Vol. 1: Trees. Springer Verlag, Berlin. pp.101–112.

Al-Atawneh N, Shehadeh A, Amri A, Maxted N. 2009. Conservation Field Guide to Medics of the Mediterranean Basin. ICARDA, Aleppo, Syria.

Alefeld F. 1866. Landwirthschaftliche Flora. Wiegandt & Hempel, Berlin.

Alercia A, Diulgheroff S, Metz T. 2001. FAO/IPGRI Multi-crop Passport Descriptors. Bioversity International, Rome. Available online (accessed 6 October 2011): www.bioversityinternational.org/index.php?id=19&user_bioversitypublications_pi1%5BshowUid%5D=2192.

Ali N, Probert R, Hay F, Davies H, Stuppy W. 2007. Post-dispersal embryo growth and acquisition of desiccation tolerance in Anemone nemorosa L. seeds. Seed Science Research 17:155–163.

Allard RW. 1970. Population structure and sampling methods. In: Frankel OH, Bennett E, editors. Genetic Resources in Plants: Their Exploration and Conservation. Blackwell Scientific Publications, Oxford, UK. pp.97–107.

Altieri MA. 1993. Ethnoscience and biodiversity: key elements in the design of sustainable pest management systems for small farmers in developing countries. Agriculture, Ecosystems and Environment 46:257–272.

Angelovici R, Galili G, Fernie AR, Fait A. 2010. Seed desiccation: a bridge between maturation and germination. Trends in Plant Science 15:211–218.

Anon. 1983. Description et essai de classification de variétés de Haricot Nain. National Institute for Agricultural Research (INRA), Versailles.

Andrews S, Leslie AC, Alexander C, editors. 1999. Taxonomy of Cultivated Plants: Third International Symposium. Royal Botanic Gardens, Kew, UK.

APG III. 2009. An update of the angiosperm phylogeny group classification for the orders and families of flowering plants: APG III. Botanical Journal of the Linnean Society 161(2):105–121. Available online (accessed 6 October 2011): http://onlinelibrary.wiley.com/doi/10.1111/j.1095-8339.2009.00996.x/pdf.

Arai-Kichise Y, Shiwa Y, Nagasaki H, Ebana K, Yoshikawa H, Yano M, Wakasa K. 2011. Discovery of genome-wide DNA polymorphisms in a landrace cultivar of japonica rice by whole-genome sequencing. Plant Cell Physiology 52(2):274–282.

Araújo MB, Pearson RG, Thuiller W, Erhard M. 2005. Validation of species-climate impact models under climate change. Global Change Biology 11:1504–1513.

Arponen A, Heikkinen R, Thomas CD, Moilanen A. 2005. The value of biodiversity in reserve selection: Representation, species weighting and benefit functions. Conservation Biology 19: 2009–2014.

Atlas Florae Europaeae. 2011. Distribution of Vascular Plants in Europe. Finnish Museum of Natural History, University of Helsinki, Helsinki. Available online (accessed 6 October 2011): www.luomus.fi/english/botany/afe/index.htm.

Austin M. 2007. Species distribution models and ecological theory: a critical assessment and some possible new approaches. Ecological Modelling 200:1–19. Available online (accessed 6 October 2011): www.whoi.edu/cms/files/Ecological_Modelling_2007_Austin_53560.pdf.

Azurdia C, Williams K, Williams D, Van Damme A, Jarvis A, Castaño S. 2011. Atlas of Guatemalan crop wild relatives. Available online (accessed 10 June 2012): www.ars.usda.gov/ba/atlascwrguatemala.

Bacchetta G, Bueno A, Fenu G, Jiménez-Alfaro B, Mattana E, Piotto B, Virevaire M. 2008. Conservación Ex Situ De Plantas Silvestres. Gobierno del Principado de Asturias, Obra Social La Caixa, Oviedo, Spain.

Bagyaraj JD, Stümer SL. 2008. Arbuscular mycorrhizal fungi. In: Moreira FMS, Huising J, Bignell DE, editors. A Handbook of Tropical Soil Biology. Earthscan, London. pp.131–146.

Bajaj YPS. 1987. Cryopreservation of pollen and pollen embryos, and the establishment of pollen banks. International Review of Cytology 107:397–420.

Balmford A. 2003. Conservation planning in the real world: South Africa shows the way. Trends in Ecology and Evolution 18:435–438.

Bandel G, Gurgel JTA. 1967. Proporção do sexo em Pinheiro Brasileiro Araucaria angustifolia (Bert.) O. Ktze. Rev. Tec. Serv. Florestal do Est. de S. Paulo. Secr. Agr. Est. S. Paulo 6: 209–220.

Barazani O, Perevolotsky A, Hadas R. 2008. A problem of the rich: Prioritizing local plant genetic resources for ex situ conservation in Israel. Biological Conservation 141: 596–600.

Barnabás B. 1994. Preservation of maize pollen. In: Bajaj YPS, editor. Biotechnology in Agriculture and Forestry. Vol. 25. Springer Verlag, Berlin. pp. 608–618.

Barnabás B, Kovács G. 1996. Storage of pollen. In: Shivanna KR, Sawhney VK, editors. Pollen Biotechnology for Crop Production and Improvement. Cambridge University Press, Cambridge, UK. pp. 293–314.

Barnabás B, Rajki E. 1976. Storage of maize (Zea mays L.) pollen at -196oC in liquid nitrogen. Euphytica 25:747–752.

Barret SCH, Yakimowsky SB, Field DL, Pickup M. 2010. Ecological genetics of sex ratios in plant populations. Philosophical Transactions of the Royal Society B. 365:2549–2557.

Baum BR. 1981 Taxonomy of the infraspecific variability of cultivated plants. Kulturpflanze 29:209–239.

Baum BR, Duncan T, Phillips RB. 1984. A bibliography of numerical phenetic studies in systematic botany. Annals of the Missouri Botanical Garden 71:1044–1060.

Bawa KS. 1974. Breeding systems of tree species of a lowland tropical community. Evolution 28(1):85–92.

Bawa KS. 1980. Evolution of dioecy in flowering plants. Annual Review of Ecology, Evolution, and Systematics 11:15–39.

Bawa KS, Perry DR, Beach JH. 1985. Reproductive biology of tropical lowland rain forest. I. Sexual systems and incompatibility mechanisms. American Journal of Botany 72(3):331–345.

Beaton G, Pegler DN, Young TWK. 1985. Gasteroid Basidiomycota of Victoria State, Australia: 8–9. Kew Bulletin 40:827–842.

Beauvais GP, Keinath DA, Hernandez P, Master L, Thurston R. 2006. Element Distribution Modeling: A Primer. Version 2. NatureServe, Arlington, Virginia. Available online (accessed 6 October 2011): www.natureserve.org/prodServices/pdf/EDM_white_paper_2.0.pdf.

Becking JH. 1977. Dinitrogen fixing associations in higher plants other than legumes. In: Hardy RWF, Silver W, editors. A Treatise on Dinitrogen Fixation. John Wiley & Sons, New York. pp.185–275.

Beentje H. 2010. The Kew Plant Glossary: An Illustrated Dictionary of Plant Terms. Royal Botanic Gardens, Kew, UK.

Bell AD. 1991. Plant Form: An Illustrated Guide to Flowering Plant Morphology. Oxford University Press, Oxford, UK.

Bellon MR, Brush SB. 1994. Keepers of the maize in Chiapas, Mexico. Economic Botany 48:196û209.

Bekessy SA, Ennos RA, Burgman MA, Newton AC, Ades PK. 2003. Neutral DNA markers fail to detect genetic divergence in an ecologically important trait. Biological Conservation 110(2):267–275.

Bennett SJ, Bullitta S. 2003. Ecogeographical analysis of the distribution of six Trifolium species in Sardinia. Biodiversity and Conservation 12(7):1455–1466.

Benson EE, Harding K, Debouck D, Dumet D, Escobar R, Mafla G, Panis B, Panta A, Tay D, Van den houwe I, Roux N. 2011. Refinement and standardization of storage procedures for clonal crops - Global Public Goods Phase 2: Part I. Project landscape and general status of clonal crop in vitro conservation technologies. System-wide Genetic Resources Programme, Rome, Italy. Available here (2.5 MB).

Benson EE, Harding K, Debouck D, Dumet D, Escobar R, Mafla G, Panis B, Panta A, Tay D, Van den houwe I, Roux N. 2011. Refinement and standardization of storage procedures for clonal crops - Global Public Goods Phase 2: Part II. Status of in vitro conservation technologies for: Andean root and tuber crops, cassava, Musa, potato, sweet potato and yam. System-wide Genetic Resources Programme, Rome, Italy. Available here (9 MB).

Benson EE, Harding K, Debouck D, Dumet D, Escobar R, Mafla G, Panis B, Panta A, Tay D, Van den houwe I, Roux N. 2011. Refinement and standardization of storage procedures for clonal crops - Global Public Goods Phase 2: Part III. Multi-crop guidelines for developing in vitro conservation best practices for clonal crops. System-wide Genetic Resources Programme, Rome, Italy. Available here (4.5 MB).

Berjak P, Pammenter NW. 2003. Understanding and handling desiccation-sensitive seeds. In: Smith RD, Dickie JB, Linington SH, Pritchard HW, Probert RJ, editors. Seed Conservation: Turning Science into Practice. The Royal Botanic Gardens, Kew, Richmond, UK. pp. 415–430. Available online (accessed 4 October 2011): www.kew.org/msbp/scitech/publications/SCTSIP_digital_book/pdfs/Chapter_22.pdf.

Berjak P, Pammenter NW. 2008. From Avicennia to Zizania: seed recalcitrance in perspective. Annals of Botany 101:213–228.

Berjak P, Vertucci CW, Pammenter NW. 1993. Effects of developmental status and dehydration rate on characteristics of water and desiccation sensitivity in recalcitrant seeds of Camellia sinensis. Seed Science Research 3: 155–166.

Berlin B. 1999. Chapter 4: How a folk botanical system can be both natural and comprehensive: one Maya Indian’s view of the plant world. In: Medin DL, Atran S, editors. Folkbiology. Massachusetts Institute of Technology. pp.71–89.

Bettencourt E, Konopka J, Damania AB. 1989. Directory of Crop Germplasm Collections. 1. Food LEGUMES. International Board for Plant Genetic Resources, Rome.

Bhullar NK, Street K, Mackay M, Yahiaoui N, Keller B. 2009. Unlocking wheat genetic resources for the molecular identification of previously undescribed functional alleles at the Pm3 resistance locus. Proceedings of the National Academy of Sciences 106:9519 –9524.

Bilz M, Kell SP, Maxted N, Lansdown RV. 2011. European Red List of Vascular Plants. Publications Office of the European Union, Luxembourg.

Bioversity and The Christensen Fund. 2009. Descriptors for Farmers’ Knowledge of Plants. Bioversity International, Rome, and The Christensen Fund, Palo Alto, California. Available online (accessed 8 October 2011): www.bioversityinternational.org/nc/publications/publication/issue/descriptors_for_farmers_knowledge_of_plants.html.

Bioversity International. 2009. Modern crop varieties can increase local genetic diversity. Plant Breeding News, an Electronic Newsletter of Applied Plant Breeding, edition 201, May 2009. Available online (accessed 6 October 2011): www.fao.org/ag/agp/agpc/doc/services/pbn/pbn-201.htm#a115.

Björk B-C, Welling P, Laakso M, Majlender P, Hedlund T, Guðnason G. 2010. Open access to the scientific journal literature: situation 2009. PLoS ONE 5(6): e11273/journal.pone.0011273. Available on-line (accessed 20 September 2011): www.plosone.org/article/info:doi/10.1371/journal.pone.0011273.

Blach-Overgaard A, Svenning J-C, Dransfield J, Greve M, Balslev H. 2010. Determinants of palm species distributions across Africa: the relative roles of climate, non-climate environmental factors, and spatial constraints. Ecography 33:380–391.

Bland RG, Jacques HE. 1978. How To Know Insects. WC Brown Company Publishers, Dubuque, Iowa.

Blixt S. 1979. Some genes of importance for the evolution of the pea in cultivation (and a short presentation of the Weibullsholm-PGA collection). In: Zeven AC, van Harten AM, editors. Broadening the Genetic Basis of Crops. PUDOC, Wageningen, The Netherlands. pp.195–202.

Bolat I, Pirlak L. 1999. An investigation on pollen viability, germination and tube growth in some stone fruits. Turkish Journal of Agriculture and Forestry 23:383–388.

Bontemps C, Elliott G, Simon MF, Does Reis Junior FB, Gross E, Lauton RC, Elias Neto N, Loureiro MF, de Faria S, Sprent J, James EK, Young P. 2010. Burkholderia species are ancient symbionts of legumes. Molecular Ecology 19:44–52.

Borror DJ, Delong DM, Triplehorn CA. 1976. An Introduction to the Study of Insects. Holt, Rinehart and Winston, New York.

Boster JS. 1985. Selection for perceptual distinctiveness: evidence from Aguaruna cultivars of Manihot esculenta. Economic botany 39(3):310–325.

Brach AR, Song H. 2006. eFloras: New directions for online floras exemplified by the Flora of China Project. Taxon 55(1):188–192.

Bradshaw JE, editor. 2010. Root and Tuber Crops. Handbook of Plant Breeding, Vol. 7. Springer Verlag, London.

Brandenburg WA. 1999. Crop-weed complexes and the culton concept. In: Andrews S, Leslie AC, Alexander C, editors. Taxonomy of Cultivated Plants: Third International Symposium. Royal Botanic Gardens, Kew, UK. pp.145–157.

Brandenburg WA, Schneider F. 1988. Cultivar grouping in relation to the International Code of Nomenclature for Cultivated Plants. Taxon 37:141–147.

Breiman L. 2001 Random forests. Machine Learning 45:5–32.

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Walters C, Wheeler LM, Grotenhuis JM. 2005. Longevity of seeds stored in a genebank: species characteristics. Seed Science Research 15:1-20.

Warham EJ, Butler LD, Sutton BC. 1996. Seed testing of maize and wheat: A laboratory guide. CIMMYT, Mexico and CAB International, UK.

Wiese MV. 1987. Compendium of Wheat Diseases, 2nd edition. APS Press, The American Phytopathological Society, St. Paul, MN, USA.


 

Other crops references

Publications on Other crops

Bean

Key access and utilization descriptors for bean genetic resources, Bioversity International and Centro Internacional de Agricultura Tropical (CIAT), 2009. Click here to open this publication (0.1 MB)

Potato

Jeffries CJ. 1998. Potato: FAO/IPGRI Technical guidelines for the safe movement of potato germplasm. International Plant Genetic Resources Institute. Rome, Italy. Click here to open this publication (1.9MB)

 


Rice references

Publications on Rice

Agreement between (Depositor) and the Royal Norwegian Ministry of Agriculture and Food Concerning the Deposit of Seeds in the Svalbard Global Seed Vault. Available [online] from: http://www.nordgen.org/sgsv/scope/sgsv/files/SGSV_Deposit_Agreement.pdf. Date accessed: 4 February 2010.

Agreement sample form. Available from: http://sgrp.cgiar.org/sites/default/files/AgreementwithCentresfinal1.doc. Date accessed: 15 June 2010.

Annex I List of crops covered under the multilateral system [online]. Available from: http://www.croptrust.org/documents/web/Annex1.pdf. Date accessed: 4 February 2010.

Bioversity International, IRRI and WARDA. 2007. Descriptors for wild and cultivated rice (Oryza spp.). Bioversity International, Rome, Italy; International Rice Research Institute, Los Banos, Philippines; WARDA, Africa Rice Center, Contonou, Benin. Available here. (1.2 MB).

Bioversity International, IRRI. 2009. Key access and utilization descriptors for rice genetic resources. Bioversity International, Rome, Italy; International Rice Research Institute, Philippines. Available here.

Borromeo TH, Sanchez PL, Vaughan DA. 1994. Wild rices of the Philippines. Philippine Rice Research Institute, Maligaya, Nueva Ecija, Philippines.

Chakravarthi BK, Naravaneni R, 2006. SSR marker based DNA fingerprinting and diversity study in rice (Oryza sativa L.) [online]. Available from: http://ajol.info/index.php/ajb/article/viewFile/42772/26341. Date accessed: 2 June 2009

Chang TT, Vaughan DA.1989. Conservation and potentials of rice genetic resources. In: Bajaj YFS, editor. Biotechnology in agriculture and forestry. Berlin: Springer Verlag.

FAO/IPGRI. 1994. Genebank standards. Food and Agriculture Organization of the United Nations, Rome and International Plant Genetic Resources Institute, Rome. Available in English, Spanish, French and Arabic.

Fulton TM, Chunwongsw J, Taksley SD. 1995. Microprep protocol for extraction of DNA from tomato and other herbaceous plants. Plant Molecular Biology Reporter. 13(3):207-209. Available for purchase from: http://www.springerlink.com/content/x26j8q2r7644r668/. 

Golden rice project [homepage] [online]. 2009. Available from: http://www.goldenrice.org/index.html. Date accessed: 30 June 2009.

Hanson J. 1985. Practical Manuals for Genebanks: Procedures for handling seeds in genebanks. IBPGR, Rome, Italy. HTML version available from: http://www2.bioversityinternational.org/publications/Web_version/188/. Date accessed: 10 June 2010.

International Rice GeneBank Operations Manual [online]. Available from: http://www.knowledgebank.irri.org/GRCManuals/default.htm. Date accessed: 1 February 2010.

International Rice GeneBank Operations Manual. [online] Available from: http://www.knowledgebank.irri.org/GRCManuals/default.htm. Date accessed: 10 Jun 2010.

Rice Knowledge Bank. Homepage [online]. Available from: www.knowledgebank.irri.org/rice.htm. Date accessed: 10 June 10.

IRRI. 2000. Manual of operations and procedures of the International Rice Genebank. Genetic Resources Center, IRRI.

ISTA. 2008. Detection of Pyricularia oryzae on Oryza sativa (Rice). International Seed Testing Association (ISTA), Bassersdorf, Switzerland. Available from: http://www.seedtest.org/upload/cms/user/7-011.pdf. Date accessed: 15 June 2010.

Korzun V. Molecular markers and their application in cereals breeding [online]. Available from: http://www.fao.org/biotech/docs/Korzun.pdf. Date accessed: 2 June 2009.

Lemaux GP. LL601 Rice. What Is It & What Does It Mean? Available from: http://ucbiotech.org/resources/factsheets/LibertyLink.pdf. Date accessed: 15 June 2010.

IRRI. 1997. Bt rice: Research and policy issues. IRRI Information Series No. 5. International Rice Research Institute, Philippines. ISSN 0117-3715. Available from: http://www.irri.org/publications/pdfs/bt.pdf. Date accessed: 15 June 2010.

ISIS. The 'Golden Rice' - An Exercise in How Not to Do Science. [online] Institute of Science in Society. Available from: http://www.i-sis.org.uk/rice.php. Date accessed: 30 June 2009.

Wang Y, Jonhston S. 2007. The status of GM rice R&D in China. Nature Biotechnology. 25:717-718. Abstract available from:
http://www.nature.com/nbt/journal/v25/n7/full/nbt0707-717.html. Date accessed: 15 June 2010.

Lu BR. 1999. Taxonomy of the genus Oryza (Poaceae): Historical perspective and current status. IRRN 24.3. IRRI, Los Baños, Laguna.

Manual of operations and procedures of the International Rice Genebank. 2000. Genetic Resources Center, IRRI. Available here.

Mew TW, Misra JK, editors. 1994. A Manual of Rice Seed Health Testing. International Rice Research Institute, Los Banos, Languna, Philippines. Available from: http://books.irri.org/9712200493_content.pdf. Date accessed: 15 June 2010.

Micro satellite markers [online]. Available from: http://www.gramene.org/markers/microsat/. Date accessed 2 June 2009.

Naredo MEB, Juliano AB, Lu BR, de Guzman FC, Jackson MT. 1998. Responses to seed dormancy breaking treatments in rice species (Oryza L). Seed Science and Technology, 26:675-689.

Rao NK, Hanson J, Dulloo ME, Ghosh K, Nowel D, Larinde M. 2006. Manual of seed handling in genebanks. Handbooks for Genebanks No. 8. Bioversity International, Rome, Italy. Available in English (1.5 MB),  Spanish (1.4 MB) and French (1.9 MB).

Rao NK, Jackson MT. 1996a. Seed longevity of rice cultivars and strategies for their conservation in genebanks. Annals of Botany 77:251-260.

Rao NK, Jackson MT. 1996b. Seed production environment and storage longevity of japonica rices (Oryza sativa L.). Seed Science Research 6:17-21.

Rao NK, Jackson MT. 1996c. Effect of sowing date and harvest time on longevity of rice seeds. Seed Science Research 7:13-20.

Reaño R, Pham JL. 1998. Does cross-pollination between accessions occur during seed regeneration at the International Rice Genebank. International Rice Research Notes 23(3):5-6.

Reed BM, Engelmann F, Dulloo ME, Engels JMM. 2004. Technical guidelines for the management of field and in vitro germplasm collections. Handbook for Genebanks No. 7. IPGRI, Rome, Italy. Available here.

Rice Knowledge Bank [online]. Available from: http://www.knowledgebank.irri.org/rice.htm. Date accessed: 1 February 2010.

Sackville-Hamilton NRS, Chorlton KH. 1997. Regeneration of accessions in seed collections: a decision guide. Handbook for Genebanks No. 5. IPGRI, Rome, Italy. Available here.

Sarao NK, Vikal Y, Singh K,  Joshi MA, Sharma RC. 2009. SSR marker-based DNA fingerprinting and cultivar identification of rice (Oryza sativa L.) in Punjab state of India.

SNP fact sheets [online]. Available from: http://www.ornl.gov/sci/techresources/Human_Genome/faq/snps.shtml. Date accessed: 2 June 2009.

Standard Material Transfer Agreement (SMTA). [online] Available from: http://www.planttreaty.org/smta_en.htm. Date accessed: 3 June 2010. 

Tateoka T. 1962a. Taxonomic studies of Oryza I. O. latifolia complex. Bot. Mag. Tokyo 75:418-427.

Tateoka T. 1962b. Taxonomic studies of Oryza II. Several species complexes. Bot. Mag. Tokyo. 75: 455-461

Tateoka T. 1963. Taxonomic studies of Oryza III. Key to the species and their enumeration. Bot. Mag. Tokyo. 76: 166-173.

The Consultative Group on International Agricultural Research [homepage of the CGIAR] [online] Available from: www.cgiar.org. Date accessed: 4 February 2010.

The International Treaty on Plant Genetic Resources for Food and Agriculture [homepage of the ITPGRFA] [online]. Available from: http://www.planttreaty.org/ Date accessed: 4 February 2010.

Van Soest LJM. 1990. Plant Genetic Resources: Safe for the future in genebanks. Impact of Science on Society 158:107-120.

Vaughan DA, Chang TT. 1992. In situ conservation of rice genetic resources. Economic Botany 46(4): 368-383.

Vaughan DA, Morishima H, Kadowaki K. 2003. Diversity in the Oryza genus. Current Opinion 6:139-146.

Vaughan DA, Sitch LA. 1991. Gene flow from the jungle to farmers. Bioscience Vol. 41(1):22-28.

Vaughan DA. 1989. The genus Oryza L. Current status of taxonomy. IRRI Research Paper Series 138, Manila, Philippines.

Vaughan DA. 1992. The wild relatives of rice: A genetic resources handbook. IRRI, Los Baños, Philippines.

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